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Small RNA mismatch tool
Enter the sequence of a specific miRNA or small RNA sequence that you would like to compare to a selected library. This page only allows mismatches (no indels), so it is best for finding evolutionarily conserved sequences. The limit for the input sequence length is 30 characters. Please use FASTA format.


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To compare known miRNAs against a library, select the species below and then click on "Paste miRNAs" and this will paste a list of known miRNAs into the box above. The species represent those for which we have obtained the list from the Sanger registry. This is not a comprehensive list, but represents the species on which we are working most actively.


Arabidopsis
Rice
Maize
Legume

(or) Upload your miRNA sequence file
   

Please select the small RNA library from the following lists for comparison to the DNA sequence that you have entered above.
Select Species:   
Select Library:   
Scoring system: Default    Custom settings
Enter score: < =   Bulge   Mismatch
(enter score values in the format 1.0, 1.5, 2.0 )

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