Enter the sequence of a specific miRNA or small RNA sequence that you would like to compare to a selected library. This page only allows mismatches (no indels), so it is best for finding evolutionarily conserved sequences. The limit for the input sequence length is 30 characters. Please use FASTA format.

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To compare known miRNAs against a library, select the species below and then click on "Paste miRNAs" and this will paste a list of known miRNAs into the box above. The species represent those for which we have obtained the list from the Sanger registry. This is not a comprehensive list, but represents the species on which we are working most actively.


Arabidopsis
Rice
Maize
Legume

(or) Upload your miRNA sequence file

   

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Please select the small RNA library from the following lists for comparison to the DNA sequence that you have entered above.

Select Species:    Select Species Aristolochia fimbriata Amborella trichopoda Capsicum annum Chara corallina Cucurbita maxima Carica papaya Chlamydomonas reinhardtii Cycas rumphii Citrus sinensis Gossypium arboreum Ginkgo biloba Hordeum vulgare Lactuca sativa Musa acuminata Miscanthus giganteus Mimulus guttatus Marsilea quadrifolia Nuphar advena Nicotiana Tabacum Picea abies Persea americana Petunia hybrida Populus trichocarpa Panicum virgatum Sorghum bicolor Setaria italica Silene latifolia Solanum lycopersicum Solanum tuberosum Triticum aestivum Volvox carteri Vitis vinifera Zea mays Zostera marina Cleome Violacea Moringa Oleifera Tropaeolum Majus

Select Library:    Select Library

Scoring system: Default    Custom settings

Enter score: < =   Bulge   Mismatch
(enter score values in the format 1.0, 1.5, 2.0 )

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