miTRATA (MicroRNA Truncation and Tailing Analysis)
This webtool (described in a 2015 paper in Bioinformatics) can be used to find differential 3′ truncation (decay) and
tailing (addition of 3' nucleotides) modifications of plant small RNAs; it requires the following inputs:
1. Small RNA sequence files.
2. Genome of interest (aka the bowtie index, which can be selected by drop down – provided in the webtool).
3. List of mature miRNA sequence(s) (FASTA format) from miRBase. A link is provided in our webtool to collect mature miRNA sequence(s) from miRBase.